AUTHORS
LICENSE
README
README.md
pyproject.toml
setup.py
contrib/champ/champ.c
contrib/champ/champ_module.c
contrib/champ/chiral.c
contrib/champ/err2.c
contrib/champ/feedback2.c
contrib/champ/list.c
contrib/champ/os_memory.c
contrib/champ/sort.c
contrib/champ/strblock.c
contrib/champ/vla.c
contrib/mmtf-c/mmtf_parser.cpp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c
contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c
contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/corplugin.c
contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/hash.c
contrib/uiuc/plugins/molfile_plugin/src/inthash.c
contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c
contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c
contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c
contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c
layer0/Bezier.cpp
layer0/Block.cpp
layer0/CarveHelper.cpp
layer0/ContourSurf.cpp
layer0/Crystal.cpp
layer0/Err.cpp
layer0/Error.cpp
layer0/Feedback.cpp
layer0/Field.cpp
layer0/File.cpp
layer0/GFXManager.cpp
layer0/GenericBuffer.cpp
layer0/GraphicsUtil.cpp
layer0/Isosurf.cpp
layer0/Map.cpp
layer0/Match.cpp
layer0/Matrix.cpp
layer0/MemoryDebug.cpp
layer0/MemoryUsage.cpp
layer0/MyPNG.cpp
layer0/Parse.cpp
layer0/Pixmap.cpp
layer0/PostProcess.cpp
layer0/PrintUtils.cpp
layer0/ShaderMgr.cpp
layer0/ShaderPreprocessor.cpp
layer0/ShaderPrg.cpp
layer0/Sphere.cpp
layer0/TTT.cpp
layer0/Tetsurf.cpp
layer0/Texture.cpp
layer0/Tracker.cpp
layer0/Triangle.cpp
layer0/Util.cpp
layer0/Util2.cpp
layer0/Vector.cpp
layer0/Word.cpp
layer0/ccealignmodule.cpp
layer0/marching_cubes.cpp
layer0/os_gl.cpp
layer1/Basis.cpp
layer1/ButMode.cpp
layer1/CGO.cpp
layer1/CGOGL.cpp
layer1/CGORenderer.cpp
layer1/COLLADA.cpp
layer1/Camera.cpp
layer1/Character.cpp
layer1/Color.cpp
layer1/Control.cpp
layer1/Extrude.cpp
layer1/Font.cpp
layer1/FontGLUT.cpp
layer1/FontGLUT8x13.cpp
layer1/FontGLUT9x15.cpp
layer1/FontGLUTHel10.cpp
layer1/FontGLUTHel12.cpp
layer1/FontGLUTHel18.cpp
layer1/FontType.cpp
layer1/ImageUtils.cpp
layer1/Movie.cpp
layer1/Ortho.cpp
layer1/P.cpp
layer1/PConv.cpp
layer1/Picking.cpp
layer1/Pop.cpp
layer1/Property.cpp
layer1/PyMOLObject.cpp
layer1/Ray.cpp
layer1/Rep.cpp
layer1/Scene.cpp
layer1/SceneMouse.cpp
layer1/ScenePicking.cpp
layer1/SceneRay.cpp
layer1/SceneRender.cpp
layer1/SceneView.cpp
layer1/ScrollBar.cpp
layer1/Seq.cpp
layer1/Setting.cpp
layer1/Shaker.cpp
layer1/SymOp.cpp
layer1/SymOpPConv.cpp
layer1/SymOpTools.cpp
layer1/Symmetry.cpp
layer1/Text.cpp
layer1/TypeFace.cpp
layer1/View.cpp
layer1/Wizard.cpp
layer2/AssemblyHelpers.cpp
layer2/AtomInfo.cpp
layer2/AtomInfoHistory.cpp
layer2/BondTypeHistory.cpp
layer2/CifFile.cpp
layer2/CifMoleculeReader.cpp
layer2/CoordSet.cpp
layer2/DistSet.cpp
layer2/GadgetSet.cpp
layer2/HydrogenAdder.cpp
layer2/MmodTyping.cpp
layer2/MmtfMoleculeReader.cpp
layer2/Mol2Typing.cpp
layer2/MolV3000.cpp
layer2/ObjectAlignment.cpp
layer2/ObjectCGO.cpp
layer2/ObjectCallback.cpp
layer2/ObjectCurve.cpp
layer2/ObjectDist.cpp
layer2/ObjectGadget.cpp
layer2/ObjectGadgetRamp.cpp
layer2/ObjectGroup.cpp
layer2/ObjectMap.cpp
layer2/ObjectMesh.cpp
layer2/ObjectMolecule.cpp
layer2/ObjectMolecule2.cpp
layer2/ObjectMolecule3.cpp
layer2/ObjectSlice.cpp
layer2/ObjectSurface.cpp
layer2/ObjectVolume.cpp
layer2/RepAngle.cpp
layer2/RepCartoon.cpp
layer2/RepCylBond.cpp
layer2/RepDihedral.cpp
layer2/RepDistDash.cpp
layer2/RepDistLabel.cpp
layer2/RepDot.cpp
layer2/RepEllipsoid.cpp
layer2/RepLabel.cpp
layer2/RepMesh.cpp
layer2/RepNonbonded.cpp
layer2/RepNonbondedSphere.cpp
layer2/RepRibbon.cpp
layer2/RepSphere.cpp
layer2/RepSphereGenerate.cpp
layer2/RepSphereImmediate.cpp
layer2/RepSurface.cpp
layer2/RepWireBond.cpp
layer2/Sculpt.cpp
layer2/SculptCache.cpp
layer2/SideChainHelper.cpp
layer2/USalign.cpp
layer2/VFont.cpp
layer3/AtomIterators.cpp
layer3/CifDataValueFormatter.cpp
layer3/Editor.cpp
layer3/Executive.cpp
layer3/ExecutivePython.cpp
layer3/Interactions.cpp
layer3/MaeExportHelpers.cpp
layer3/MoleculeExporter.cpp
layer3/MovieScene.cpp
layer3/PlugIOManager.cpp
layer3/RingFinder.cpp
layer3/Seeker.cpp
layer3/Selector.cpp
layer3/SelectorTmp.cpp
layer3/SpecRec.cpp
layer3/SpecRecSpecial.cpp
layer4/Cmd.cpp
layer4/Menu.cpp
layer4/PopUp.cpp
layer5/PyMOL.cpp
layer5/TestPyMOL.cpp
layer5/main.cpp
layerGraphics/gl/GLVertexBuffer.cpp
modules/chempy/__init__.py
modules/chempy/arc.py
modules/chempy/bond_amber.py
modules/chempy/bond_mmff.py
modules/chempy/bonds.py
modules/chempy/brick.py
modules/chempy/cc1.py
modules/chempy/charge.py
modules/chempy/cif.py
modules/chempy/cpv.py
modules/chempy/dictdb.py
modules/chempy/gamess1.py
modules/chempy/gms.py
modules/chempy/hetatm.py
modules/chempy/io.py
modules/chempy/lst.py
modules/chempy/mae.py
modules/chempy/map.py
modules/chempy/mass.py
modules/chempy/mmd.py
modules/chempy/models.py
modules/chempy/mol.py
modules/chempy/mol2.py
modules/chempy/neighbor.py
modules/chempy/pdb.py
modules/chempy/pkl.py
modules/chempy/place.py
modules/chempy/protein.py
modules/chempy/protein_amber.py
modules/chempy/protein_amber99.py
modules/chempy/protein_mmff.py
modules/chempy/protein_residues.py
modules/chempy/sdf.py
modules/chempy/solvate.py
modules/chempy/water_amber.py
modules/chempy/water_residues.py
modules/chempy/xyz.py
modules/chempy/bmin/__init__.py
modules/chempy/bmin/commands.py
modules/chempy/bmin/realtime.py
modules/chempy/bmin/state.py
modules/chempy/bmin/util.py
modules/chempy/champ/__init__.py
modules/chempy/champ/amber99.py
modules/chempy/champ/assign.py
modules/chempy/champ/formal_charges.py
modules/chempy/fast/__init__.py
modules/chempy/fragments/__init__.py
modules/chempy/mmtf/__init__.py
modules/chempy/mmtf/io.py
modules/chempy/tinker/__init__.py
modules/chempy/tinker/amber.py
modules/chempy/tinker/keyword.py
modules/chempy/tinker/realtime.py
modules/chempy/tinker/state.py
modules/pmg_qt/TextEditor.py
modules/pmg_qt/__init__.py
modules/pmg_qt/advanced_settings_gui.py
modules/pmg_qt/builder.py
modules/pmg_qt/file_dialogs.py
modules/pmg_qt/keymapping.py
modules/pmg_qt/mimic_pmg_tk.py
modules/pmg_qt/mimic_tk.py
modules/pmg_qt/properties_dialog.py
modules/pmg_qt/pymol_gl_widget.py
modules/pmg_qt/pymol_qt_gui.py
modules/pmg_qt/scene_bin_gui.py
modules/pmg_qt/shortcut_menu_gui.py
modules/pmg_qt/volume.py
modules/pmg_qt/forms/__init__.py
modules/pmg_qt/forms/askpartial.ui
modules/pmg_qt/forms/change_confirm.ui
modules/pmg_qt/forms/colors.ui
modules/pmg_qt/forms/create_shortcut.ui
modules/pmg_qt/forms/fetch.ui
modules/pmg_qt/forms/help_shortcut.ui
modules/pmg_qt/forms/load_aln.ui
modules/pmg_qt/forms/load_mae.ui
modules/pmg_qt/forms/load_map.ui
modules/pmg_qt/forms/load_mtz.ui
modules/pmg_qt/forms/load_traj.ui
modules/pmg_qt/forms/movieexport.ui
modules/pmg_qt/forms/pluginitem.ui
modules/pmg_qt/forms/pluginmanager.ui
modules/pmg_qt/forms/png.ui
modules/pmg_qt/forms/props.ui
modules/pmg_qt/forms/render.ui
modules/pmg_qt/forms/save_molecule.ui
modules/pmg_qt/forms/save_object.ui
modules/pmg_qt/forms/shortcut_menu.ui
modules/pmg_qt/syntax/__init__.py
modules/pmg_qt/syntax/pml.py
modules/pmg_qt/syntax/pmlparser.py
modules/pmg_qt/syntax/python.py
modules/pmg_tk/ColorEditor.py
modules/pmg_tk/Demo.py
modules/pmg_tk/PMGApp.py
modules/pmg_tk/PyMOLMapLoad.py
modules/pmg_tk/SetEditor.py
modules/pmg_tk/Setting.py
modules/pmg_tk/TextEditor.py
modules/pmg_tk/__init__.py
modules/pmg_tk/volume.py
modules/pmg_tk/skins/__init__.py
modules/pmg_tk/skins/demo/__init__.py
modules/pmg_tk/skins/normal/ModalWindow.py
modules/pmg_tk/skins/normal/__init__.py
modules/pmg_tk/skins/normal/builder.py
modules/pmg_tk/startup/__init__.py
modules/pymol/__init__.py
modules/pymol/__main__.py
modules/pymol/_gui.py
modules/pymol/api.py
modules/pymol/callback.py
modules/pymol/cgo.py
modules/pymol/cgobuilder.py
modules/pymol/checking.py
modules/pymol/cmd.py
modules/pymol/colorprinting.py
modules/pymol/colorramping.py
modules/pymol/commanding.py
modules/pymol/completing.py
modules/pymol/computing.py
modules/pymol/constants.py
modules/pymol/constants_palette.py
modules/pymol/controlling.py
modules/pymol/creating.py
modules/pymol/diagnosing.py
modules/pymol/editing.py
modules/pymol/editor.py
modules/pymol/experimenting.py
modules/pymol/exporting.py
modules/pymol/externing.py
modules/pymol/feedingback.py
modules/pymol/fitting.py
modules/pymol/gui.py
modules/pymol/headering.py
modules/pymol/helping.py
modules/pymol/importing.py
modules/pymol/internal.py
modules/pymol/invocation.py
modules/pymol/keyboard.py
modules/pymol/keywords.py
modules/pymol/lazyio.py
modules/pymol/locking.py
modules/pymol/menu.py
modules/pymol/monitoring.py
modules/pymol/morphing.py
modules/pymol/movie.py
modules/pymol/moving.py
modules/pymol/mpeg_encode.py
modules/pymol/parser.py
modules/pymol/parsing.py
modules/pymol/povray.py
modules/pymol/preset.py
modules/pymol/properties.py
modules/pymol/pymolhttpd.py
modules/pymol/querying.py
modules/pymol/rpc.py
modules/pymol/save_shortcut.py
modules/pymol/selecting.py
modules/pymol/selector.py
modules/pymol/seqalign.py
modules/pymol/setting.py
modules/pymol/shortcut.py
modules/pymol/shortcut_dict.py
modules/pymol/shortcut_manager.py
modules/pymol/util.py
modules/pymol/vfont.py
modules/pymol/viewing.py
modules/pymol/wizarding.py
modules/pymol/xray.py
modules/pymol/xwin.py
modules/pymol.egg-info/PKG-INFO
modules/pymol.egg-info/SOURCES.txt
modules/pymol.egg-info/dependency_links.txt
modules/pymol.egg-info/entry_points.txt
modules/pymol.egg-info/requires.txt
modules/pymol.egg-info/top_level.txt
modules/pymol/Qt/__init__.py
modules/pymol/Qt/utils.py
modules/pymol/plugins/__init__.py
modules/pymol/plugins/installation.py
modules/pymol/plugins/legacysupport.py
modules/pymol/plugins/managergui.py
modules/pymol/plugins/managergui_qt.py
modules/pymol/plugins/repository.py
modules/pymol/stereochemistry/__init__.py
modules/pymol/wizard/__init__.py
modules/pymol/wizard/annotation.py
modules/pymol/wizard/appearance.py
modules/pymol/wizard/benchmark.py
modules/pymol/wizard/box.py
modules/pymol/wizard/charge.py
modules/pymol/wizard/cleanup.py
modules/pymol/wizard/command.py
modules/pymol/wizard/demo.py
modules/pymol/wizard/density.py
modules/pymol/wizard/distance.py
modules/pymol/wizard/dragging.py
modules/pymol/wizard/filter.py
modules/pymol/wizard/label.py
modules/pymol/wizard/measurement.py
modules/pymol/wizard/message.py
modules/pymol/wizard/mutagenesis.py
modules/pymol/wizard/nucmutagenesis.py
modules/pymol/wizard/openvr.py
modules/pymol/wizard/pair_fit.py
modules/pymol/wizard/pseudoatom.py
modules/pymol/wizard/renaming.py
modules/pymol/wizard/sculpting.py
modules/pymol/wizard/security.py
modules/pymol/wizard/stereodemo.py
modules/pymol/wizard/toggle.py
modules/pymol2/__init__.py
modules/pymol2/cmd2.py
modules/web/examples/__init__.py
modules/web/examples/justhttpd.py
ov/src/OVContext.cpp
ov/src/OVHeap.cpp
ov/src/OVHeapArray.cpp
ov/src/OVLexicon.cpp
ov/src/OVOneToAny.cpp
ov/src/OVOneToOne.cpp
ov/src/OVRandom.cpp
ov/src/ov_utility.cpp