iPE::State::AltSplice::MultiSite(3)

NAME
iPE::State::AltSplice::MultiSite - Base class for multi 5' and multi 3' site alternative splice states.

DESCRIPTION
This class defines the common functions used in multi site alternate splice states. This cannot be directly used on the user level, this is an internal class.

FUNCTIONS

getGroups (transcripts, seqLen)
    Finds groups of overlapping exons in the passed transcripts and returns them. This function requires that the innermost state (the smallest feature in the group) be the same as the origin state, and that the other states be contained in the list of alternate states. Returns a reference to an array of arrays of objects, representing these groups. The first element of every group array contains the group's smallest element.

SEE ALSO
iPE::State, iPE::State::AltSplice, iPE::State::AltSplice::MultiThreePrime, iPE::State::AltSplice::MultiFivePrime

AUTHOR
Bob Zimmermann (rpz@cse.wustl.edu)