iPE::SequenceReader::NoLoad::Raw(3)

NAME
iPE::SequenceReader::NoLoad::Raw - NoLoad version of the Raw Sequence reader

DESCRIPTION
This SequenceReader expects a file with a single line which contains the sequence with no additional characters.

FUNCTIONS

new (memberHash)
    Constructs a new Raw sequence reader. This doesn't read in the sequences, it simply make calculations which will enable it to later read portions of the sequence in from the file.

length ()
    Returns length of the sequence.

getSeq (start, length), getRevSeq (start, length)
    This gets sequence directly from the file. This works similarly to substr in that it takes in a start and 'offset' or length of the substring to retrieve. Note that getRevSeq also reverse-complements the sequence.

SEE ALSO
iPE::SequenceReader::NoLoad

AUTHOR
Bob Zimmermann (rpz@cse.wustl.edu). (With much acknowledgement to Sam Gross's code).