93525f94ffb1f35d3ed313b628a0347d *DESCRIPTION
5363006d336a64b8b587c7e1815ec384 *NAMESPACE
584a06ac582cccf9cf3b6c09ee37cda0 *NEWS
8c1ca0a9cc0fb06adb54065b78e8c03d *R/Coalescent.R
775373beed778811200b4cea1ed862d2 *R/Densi.R
93a653a2fa4b10e88aab1067528dddac *R/F3X4.R
c324e97c5b8633af50ee44abcceb447a *R/RcppExports.R
bbf68c0ac72759ee917229f2cb4475cf *R/SH.R
c03b06289fa093d49bb4b4d871e534e7 *R/SOWH.R
2cd267cf4a776f6430a4967a9994df07 *R/addConfidences.R
ea24ec00c206bf70d0aad7ab0e4b98be *R/ancestral.R
82c339849d4549ca762db0dfd353f509 *R/bab.R
ff9746709f00fdf43248cea05104be37 *R/baseFreq.R
bd2c859c1f69a94924ee90fa365df647 *R/bipart.R
47c7e09d1ed4be78a57e340ea78e2426 *R/bootstrap.R
0635d74edd0843ecb535e7d2ca5ea6dd *R/candidate_tree.R
262bb29257bae8588b39a04c6c9ae9df *R/cladePar.R
aa093860dd55cf8464453e408452d0a8 *R/clanistic.R
a97dd60478cd79525f1ba82c59e86586 *R/codon.R
496aee7f041d4cb0a05d8feb06683f3d *R/codonTest.R
19b373eb0fc4013ef4f3143dfb27f4ce *R/consensusNet.R
8d35028ef5cc61b0a73b24cb1a78ea09 *R/delta.score.R
5f9896e8e13f05ed01cb7573e217870d *R/discrete.gamma.R
940aa04f153afa4a1a1a39435f6b903a *R/dist.p.R
3d2b4dd7f261dc8aab5e20cf504b0d35 *R/distSeq.R
8422c1f11aea8e46aeb27bb2569e27b0 *R/distTree.R
dbcbf26ba1109521ff41ac4ca0fda1d8 *R/draw_CI.R
c0d62611096f56602e7f03cca6ddc56e *R/fitch64.R
26ee8a77a8bd3bbdf50c803dd2e4a656 *R/gap_as_state.R
7e163df19ab6a559745ca1a98d34bdd7 *R/hadamard.R
e26fda0042ba0441e9e2b7098c45ae5f *R/hash_phylo.R
1d1dd985510e20db3ccfea05639a19dd *R/image_phyDat.R
5990ba461674a6bd950919ef69292e38 *R/joint_ASR.R
7d5eee6139bb3b1463f024749e01a96a *R/lento.R
13763366b917584b38642ccbf79005d6 *R/linkfun.R
88e28df5a449b110195ef9cd9fb7bd83 *R/ltg2amb.R
a98ef4022b72f150d249c52dc213a971 *R/mast.R
4f9a29a20522b03fd8caf908ffea9c90 *R/maxCladeCred.R
681f85ea4ca0428f90656c4d219c0e98 *R/modelTest.R
498478344310c2d8595f4a0eb126c075 *R/neighborNet.R
2180b41e3d3ed7df8a3dd93e131f4d4c *R/networx.R
ea2e191fb852d3c00e712767380d051b *R/parsimony.R
a9218b81959033f39515f770145a0dd6 *R/phangorn-package.R
5798a9953e45b8452ee8b78cf04637c4 *R/phyDat.R
eb48dd659c4bed0693bb199fc54f982d *R/phyDat2.R
97a7eb9d76ade1cefa938425ab6f5d7d *R/phyDat_conversion.R
2d2b0025bb907c75388d984cc83a3067 *R/phylo.R
50ce9d3523e0a4a67790e11d353ad320 *R/plotAnc.R
0167bea4336a138216a93bcfda73f13b *R/plotBS.R
5bd3d4b05869542ebf0687933c35e978 *R/plot_networx.R
e8915971f55f93e7e8e256846221896c *R/plot_pml.R
e83c20d781a05108a14d860535c03112 *R/pmlMix.R
9a6c4d227c2487758a31468c415d462e *R/pmlPart.R
08eefc8b3f70e1c127afa95d5e0be591 *R/pmlPen.R
f816f2fe40863f5e085e7645c6442766 *R/pml_bb.R
39fad77a8c0f14b050b299edfc84ce7a *R/pml_control.R
4d1dbb3783d941a6ff3b34a7a18461d5 *R/pml_generics.R
68ae7183929f4f3d8ee5668b339f6533 *R/read.nexus.partitions.R
e025e83119816b535c1a3fe4b6c95402 *R/read.nexus.splits.R
41c06d507cc308072fbebe7a44e82631 *R/read.phyDat.R
14b9c3b7900be457613b0ac136c8c4ab *R/sankoff.R
18602eb8c0fdcdf43a185cfa2d592da5 *R/simSeq.R
bf8f04c0cba6996bcd45eefe7b4873b5 *R/splits.R
a1ad32a855bfc7ee84229ab5c9d04b10 *R/splitsNetwork.R
f0a531f49aad33c5b305fec6cc061c81 *R/superTree.R
dcbc5579e8941e63d79f139db0fd0a32 *R/sysdata.rda
4f7ad18c89c1e4e8736b8ae3e9d96630 *R/transferBootstrap.R
a2fb004d16a298ee6c83019c3c668dac *R/treeManipulation.R
fc9d28d970baeef062039b959a58bdf3 *R/treeRearrangement.R
61ba5fefe488d496ef9d48262cabeaa8 *R/treedist.R
6eaa98c0c177296fb947274d4ebc86e6 *R/upgma.R
938f52cd0d3c8566a6684dead5257845 *R/zzz.R
5d1d9549e0f6441e25e3d7e95a03597b *README.md
e0381f05de601e32ca2ceca9e2bc54de *build/vignette.rds
4a92b07bcd170e85bd237e460acafa93 *data/Laurasiatherian.RData
6e7e3d87e101f1fbd995f8c9135664a3 *data/chloroplast.RData
56a106e8143c27252b8588f57ba6f2a3 *data/mites.RData
19f84425e8caaf9f605490cdff17dd81 *data/yeast.RData
9aca63bc02edfd0dba5563a896938aca *inst/CITATION
61b3722df2ead748e0db8595428412a1 *inst/README
112e5a2ea343e4aa6d41c8217a45c9fb *inst/doc/AdvancedFeatures.R
53fb77a5f2c8a5c3c7241ce5992b6355 *inst/doc/AdvancedFeatures.Rmd
8c93116b8012266384d0ca928da12222 *inst/doc/AdvancedFeatures.html
cf15a8b67f7af47edc1a0c8f4be62d0c *inst/doc/Ancestral.R
e338c82ae1d88e8ac335755ba7471efb *inst/doc/Ancestral.Rmd
a44dd3996357a5022f69893081081b2a *inst/doc/Ancestral.html
14222e875907b24093ca0a7dbe308548 *inst/doc/IntertwiningTreesAndNetworks.R
f09b8cde09c12d0522b8f4ddd21d5f1f *inst/doc/IntertwiningTreesAndNetworks.Rmd
874f42bbcdc44a6572a444c989994a4b *inst/doc/IntertwiningTreesAndNetworks.html
a9503c4fca0f4f5eeb3e64e9ba6209fd *inst/doc/MLbyHand.R
a2d0dfc607eaefc4a999e75134077f06 *inst/doc/MLbyHand.Rmd
5cf4b8b69a0cf1cca5753b90fbec1f6e *inst/doc/MLbyHand.html
1939449721223f753dc58d713b87ad05 *inst/doc/Morphological.R
dd152d8898bf60dc50f750bed22a18f7 *inst/doc/Morphological.Rmd
b929658eb784f907107bd8dfca791cd6 *inst/doc/Morphological.html
c289016fecf70f213d9d87d13ca568c9 *inst/doc/Networx.R
0fd5244c39f149d36bd010aa28b8b5a1 *inst/doc/Networx.Rmd
cc791b046bc3248eaf2f94ad0e24c3c8 *inst/doc/Networx.html
3f3af1719ec940e68065bb6902ca9794 *inst/doc/Trees.R
a839b8bde8b4d6059d33ceb3f1997a54 *inst/doc/Trees.Rmd
970b54343bb5601511c9ebe38775d962 *inst/doc/Trees.html
3009f9da02a198cb557d435cc5ad8c7f *inst/extdata/Blosum62.dat
72f496d4c6e937ffe744d25bd8891313 *inst/extdata/Dayhoff.dat
5aa357dab0e72b27023e4302bc37dbad *inst/extdata/FLU.dat
7f63f617d5d29421b0bd90ab8511feb7 *inst/extdata/HIVb.dat
29e1aa10906a86bb9bca6d9c7f98a6cb *inst/extdata/HIVw.dat
ca86e539345fa57de5c77a60308bed09 *inst/extdata/JTT.dat
fdc1176d0c0f2db3de1c9dfd83d3c070 *inst/extdata/MtZoa.dat
106715eba35efc2743ccad7923ac13ce *inst/extdata/RtREV.dat
e05f5a0ca507e4e15e7b95d1ce93b9fa *inst/extdata/VT.dat
fc090d051ce4f18b937448a254e2764e *inst/extdata/cpREV.dat
50c707c26bf9015b37670f15d5e1c14b *inst/extdata/dayhoff-dcmut.dat
6da24109959f0c7a7db50c8db78d5d42 *inst/extdata/jtt-dcmut.dat
ddc4bd45521cd72848aaf2f79b90ac6e *inst/extdata/lg.dat
0102d3cf3cd09ca6360b4d93105f7244 *inst/extdata/mites.csv
3ea55154c033ba80114e345b3d73cf2a *inst/extdata/mites.nex
917303a3df098f9137c651de0afa78fa *inst/extdata/mtArt.dat
1cd5e39670b86d32b5fe5c27dcc79648 *inst/extdata/mtREV24.dat
0ca0d0e987fcebf847a876779eddd934 *inst/extdata/mtmam.dat
b61e63e6b493517a260c904dd902703f *inst/extdata/trees/H3N2_NA_20.csv
e523769910ecbef420758c7a7f252267 *inst/extdata/trees/H3N2_NA_20.fasta
20be734137b889e34006f8b8bd969054 *inst/extdata/trees/RAxML_bestTree.3moles
384aa1b8d633aa8c9f533396bd6798cb *inst/extdata/trees/RAxML_bestTree.AIs
757e4718b72d7829b5ceb34f765dc626 *inst/extdata/trees/RAxML_bestTree.Wang.out
5c7b80221c2dc93d4e6a6b857ccb62e8 *inst/extdata/trees/RAxML_bestTree.YCh
0e77d8f9386ddaee1de2f6678530c823 *inst/extdata/trees/RAxML_bestTree.mtG
2f7670326d5ff9235ecd0943944b6d59 *inst/extdata/trees/RAxML_bipartitions.3moles
959bc9ea585c21ab89b3f32a5bb49d25 *inst/extdata/trees/RAxML_bipartitions.AIs
46c172becde7e1d90ab68820b0c48822 *inst/extdata/trees/RAxML_bipartitions.YCh
75061d3e313e19632dcbce0ef48e9cdc *inst/extdata/trees/RAxML_bipartitions.mtG
2212d49c7269978890887be3686c12f9 *inst/extdata/trees/RAxML_bipartitions.woodmouse
b1b3ceb83427c63fed23790fd563ef6e *inst/extdata/trees/RAxML_bipartitionsBranchLabels.3moles
41fd855853c4ceb7e28d5212b1c72d9b *inst/extdata/trees/RAxML_bipartitionsBranchLabels.AIs
0d8694f8ea078f981819be215fb724ba *inst/extdata/trees/RAxML_bipartitionsBranchLabels.YCh
abcfbaf31212288e26a67c5b6c30ae70 *inst/extdata/trees/RAxML_bipartitionsBranchLabels.mtG
25077ff0b9f822583f5ae13d8bbc181a *inst/extdata/trees/RAxML_bootstrap.3moles
bd830645e73afa0ee2cb121c22c4d2f2 *inst/extdata/trees/RAxML_bootstrap.AIs
086fb65b6bd2d40f09fff513b86d55cc *inst/extdata/trees/RAxML_bootstrap.Wang.out
49ade6ade3f8f08033b887a001243c86 *inst/extdata/trees/RAxML_bootstrap.YCh
d2016de5a6926dd0b62c49502ec2d6b9 *inst/extdata/trees/RAxML_bootstrap.mtG
000df141b844795d38e5a755aa360f97 *inst/extdata/trees/RAxML_bootstrap.woodmouse
6cd945acf5464dce8e10c350097e2c20 *inst/extdata/trees/RAxML_distances.Wang.nxs
02888c45178001387b7a5397a3a17d3c *inst/extdata/trees/Splits.txt
d3069d1eff9e70bed655b8962bf4ee2b *inst/extdata/trees/primates.dna
1caf8878e246688217655fd093a744cf *inst/extdata/trees/seqfile.txt
ed2ca3537729babe51beb1cb41e81dc3 *inst/extdata/trees/tree.txt
129e8c41182f3557b1b9911625e100b9 *inst/extdata/trees/woodmouse.fasta
421488c1ce8687879f64a350fca6d055 *inst/extdata/trees/woodmouse.mrbayes.nex.con
d83fc4958acba1f1d0ca4092393c5b3d *inst/extdata/trees/woodmouse.mrbayes.nex.run1.t
e185a8c9c7aed17a3e216cb78d517fd4 *inst/extdata/trees/woodmouse.mrbayes.nex.run2.t
01399608c5cc2927ebed0659ac78863d *inst/extdata/trees/woodmouse.nxs
87fa1533c4dfe7074237cfa2196bcbeb *inst/extdata/wag.dat
b3ce1bb1450b5e60d76e7e7d9c5db9ce *inst/tinytest/test_Clanistics.R
47e00e8bb86bf7f5c0ee0397941f8cfd *inst/tinytest/test_SH.R
6d2035e45a23ce2deec19f4fd66cc2b9 *inst/tinytest/test_add_edge_length.R
a6e0dd907c27bbb2ce5dc1f0b6762b7f *inst/tinytest/test_ancestral.R
c4aab589beed7deec31bfc2792eb699f *inst/tinytest/test_bootstrap.R
f9882c18bcad5b37772f3162d1136983 *inst/tinytest/test_candidate_tree.R
4fd1391e9729fe532820bcbe2f0a5507 *inst/tinytest/test_codon.R
48b7a01c4f80a3f5341f25a121089e5e *inst/tinytest/test_dist_tree.R
91e058d223bee69969650e223cc0bfa0 *inst/tinytest/test_distances.R
003cf27799c5f9ac3c125e9dbdd94151 *inst/tinytest/test_hadamard.R
d45769edfd100286e94ca6a680bcc624 *inst/tinytest/test_hash.R
49bec950fdf8ff6034c263a231e3bfe3 *inst/tinytest/test_mast.R
ba70640b8bfbe949e15b9609fd56288e *inst/tinytest/test_modelTest.R
f6433cfa22dfc03aaeb17236ce2d2ba5 *inst/tinytest/test_parsimony.R
a2d415485c52443c5d5b42970ec825e0 *inst/tinytest/test_phyDat.R
5b93808e61220b94c34a2d383aa14293 *inst/tinytest/test_pml.R
6baabdc92fd297936eb619837320ef35 *inst/tinytest/test_pmlCluster.R
cac7996dfe573be6365577c8c4eed558 *inst/tinytest/test_pmlMix.R
a5dd798291887d68b901ed51478c0c62 *inst/tinytest/test_pmlPart.R
66a962bcc703434a9afff9b4d05168ea *inst/tinytest/test_pmlPen.R
fa168c4f70531e131a617d8462e0bd61 *inst/tinytest/test_pml_generics.R
51df0f1f2a1c1fad45843fb0c709b0d2 *inst/tinytest/test_readnexus_multi.R
9fb0c7de01dc40a4eac7d8231c858fa7 *inst/tinytest/test_speciesTree.R
1b7e16921bc9041df2c62f3686721553 *inst/tinytest/test_splits.R
dcac0cc9fbe28aeda00dd6a1bc9f2121 *inst/tinytest/test_superTree.R
91f54f28928a7ce4bc48f00718838e6f *inst/tinytest/test_treeManipulation.R
3645bdd96f541961003448d89470e64e *inst/tinytest/test_treeRearrangement.R
9342744307dbafb5d6db1b02d44a0482 *inst/tinytest/test_treedist.R
38a9d657686f4ab0a95c2196498a000f *man/Ancestors.Rd
952a99fda01f335cb6bd5361d0038dc8 *man/CI.Rd
2aabd7f30eb4ba55fb913d2defcc8c01 *man/Laurasiatherian.Rd
f0c375eb726b230fdd114f0b3bb1b96b *man/NJ.Rd
5912be549b4f8cee8bf5027d112f697a *man/SH.test.Rd
4e98f950b33245fe670bf81f28ba30bf *man/SOWH.test.Rd
265192aefe0c3324771e7a0b8e5cd14a *man/add.tips.Rd
068dc5ee56287e864e2227ba0b66160e *man/addConfidences.Rd
d33df27529575a1c62962d68c752f40a *man/add_ci.Rd
6e07494e7f56e6473e4c5e8559fc6ccd *man/add_edge_length.Rd
10cf985d4e6a8d89dfafd95196fcb341 *man/allTrees.Rd
967ba0604ece950a41fb292f7c01d80e *man/ancestral.pml.Rd
99264a158cd645e63da3c18c2585dde8 *man/as.networx.Rd
056c494bbc060e0bbd1a61779938bcad *man/as.phyDat.Rd
2858280487b8d51cd8d185e3b4d9d2e3 *man/as.splits.Rd
08df8449c61684b453eae573170e4ed7 *man/bab.Rd
af6fd2f7a6d09079332ca50e6b1014c1 *man/baseFreq.Rd
b30aca2caad5bd5cb3f0d27af955943e *man/bootstrap.pml.Rd
84449bdbd0b2adefb75bd71de6be5d8d *man/chloroplast.Rd
a79f3f258c352d736ef572684156bead *man/cladePar.Rd
0070732bee292b832dd42b4d98a39837 *man/coalSpeciesTree.Rd
42471258d0b98e035383fc6fc48e8665 *man/codonTest.Rd
2dd95f5acdfff91383313d8bac999a8b *man/consensusNet.Rd
8c1e72c4f54ba9ba39a1c49c0c794098 *man/cophenetic.networx.Rd
5173eb8e2f87b21391e5c49c0927e905 *man/delta.score.Rd
0ecffb309a07775785a1da21d4ae3b1a *man/densiTree.Rd
744fc793b4bfb4076c90e2b71cae8afc *man/designTree.Rd
dfbc54435ddc425192da2b8de37a90fe *man/dfactorial.Rd
b4351b6b002650f6a7df9cdc599e4ae2 *man/discrete.gamma.Rd
571f3efde7105959a3bde517a0f7535e *man/dist.hamming.Rd
8a4bbe826bf261a766136ac74bd13162 *man/dist.p.Rd
bc774bf569c795facda416ce953f5af2 *man/distanceHadamard.Rd
e8cd9d24a98e170237bf61b10ca9742b *man/dna2codon.Rd
5e5c9da6e7ba15b472b9ea3958876662 *man/figures/logo.png
5e5c9da6e7ba15b472b9ea3958876662 *man/figures/phangorn_sticker.png
cb9fd9d45bacd0bdca6895395a384333 *man/gap_as_state.Rd
d092f8360372abe2b4fcde6d1b9e3605 *man/getClans.Rd
1b39d04ee91c2585f6a812f683ac2748 *man/hadamard.Rd
e4f40527ebbcfcc9d088778d69158e75 *man/identify.networx.Rd
291676806b75d4de0a9209ff4ef27b2e *man/image.phyDat.Rd
45cb716b98a1777b91bb153363b829cc *man/latag2n.phyDat.Rd
e77fd8dbf4e3b777f4364f88c074fbed *man/lento.Rd
dc624fd67dd7f0146db5b969b8887c06 *man/mast.Rd
c7484d26aa0c9c88e3b8860f9d4da4b0 *man/maxCladeCred.Rd
0d123ec98429b65885dde714b56d4807 *man/midpoint.Rd
3813d65f2d76c7e2b5a8276c44381dc9 *man/mites.Rd
3863a4275711e8fe423a3ed5f8aed588 *man/modelTest.Rd
669667a8bb1230a23708e66338faa5c8 *man/neighborNet.Rd
214b9849369866569e980e7be0bb387a *man/nni.Rd
11d6437227c6e565349fefcde4fff08a *man/parsimony.Rd
fd720ff6be376a3adf16873d192c1795 *man/phangorn-internal.Rd
5940c895eff055b18f7df7dccaccaa01 *man/phangorn-package.Rd
f2211427e8e8948ab9ed3f8b1ae2d87e *man/phyDat.Rd
433e7775c894fead9b095e6486383020 *man/plot.ancestral.Rd
fa7127eb49fd76a0fcf20f29a0d108ce *man/plot.networx.Rd
0330517db7fb9ba9ea5fda7491afdfac *man/plot.pml.Rd
861d1922455c25e16f1bf0731c9551a3 *man/plotBS.Rd
49af286cf1df90f51b3f2c5f4e55f68d *man/pml.Rd
2898f7168c535133f0ed4db1e5d578c4 *man/pml.control.Rd
5bba328dc4e59b354257f3f4ebf1c106 *man/pml.fit.Rd
750ed9670c8cf38a135a37963597d442 *man/pmlCluster.Rd
e19a5d49ebfbe2b580c2b0d6f8596024 *man/pmlMix.Rd
cfaec643ae6a17fde55ba76fef980e06 *man/pmlPart.Rd
30bdca135e845fd6cf9c5cd6799c1ecf *man/pml_bb.Rd
2cef0196920ab7b8fcfac399d9b59a23 *man/read.nexus.partitions.Rd
becf0e5b29092e6e8eee213d798fb917 *man/read.nexus.splits.Rd
2c8c22fa5d85332cbce6cb314a0b2990 *man/read.phyDat.Rd
26ad4423a6fd8650b8bf599597615558 *man/reexports.Rd
03065d6d8d2fdbfed0e1fce7561277fc *man/simSeq.Rd
56615aed5311ba4bd692ca7ce6adb1c6 *man/splitsNetwork.Rd
2146be48e7c0ee3c57cb54bd61c1e211 *man/superTree.Rd
0af57bf3b03b797a84f8cff2118147df *man/transferBootstrap.Rd
4ccd0c490c4a6e352971180ccda0240f *man/treedist.Rd
c5f0e5fe5e83eb3a61f8b5a2d737b592 *man/upgma.Rd
f344db723f56f5e596a0df0e22a9860a *man/write.ancestral.Rd
084c6481985af493d023af5b6e40f94d *man/write.pml.Rd
8d1ad5757e44f5318adabe5b0d94a2e1 *man/writeDist.Rd
7b4fdcfc85bc945a86723f094057dbcb *man/yeast.Rd
427f79cb72f331e85c03454d5af3f8fe *src/Fitch.h
2fa4c7011c2bc0f7449ae151d5cc44ae *src/Makevars
ba1b3a0a46c7afb184dd290787697a3e *src/RcppExports.cpp
8efb64685278bb45b9f131e745ea51e4 *src/dist.c
2295da56dd4cf910c46053c2eef271a0 *src/dupAtomMat.cpp
b4ba2bfae0dedca00029643553863396 *src/fitch64.cpp
9983ccd8bf1c8cb006979d06b58c042f *src/lessAndEqual.h
ff188a73819a2e4377885cb910f92fc3 *src/ml.c
6f7f95f69b4d259fdc28d8a87f144fd2 *src/phangorn.c
578a9efee51f5568c299da1cc8052a55 *src/phangorn_utils.cpp
e19952320d4d6bd26c1b95080a7b5d0b *src/phangorn_utils.h
b322aa12ac146cbcdd5d9568a7fdb18b *src/rcSet.h
3fcbc43bbbef86c7d332a88d5515b637 *src/sankoff.c
1f91da56a713aeb7bf1f0be4a19edadd *src/sprdist.c
557c3138f1a665e2182d8a81f242757b *tests/testthat.R
97631d98c79fc5bb9f466ef4e796af9b *tests/testthat/_snaps/plot_ancestral/pie-plots.svg
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/_snaps/plot_ancestral/seqlogo.svg
5763c0cda2af66b72d80026afd3373b4 *tests/testthat/_snaps/plot_networx/plot-networx.svg
f314985f5edfa5d2d5bb06e06f326452 *tests/testthat/_snaps/plot_pml/densitree.svg
ef5d2c518f1fb7f7b0336931c2ba2f9e *tests/testthat/_snaps/plot_pml/plot-pml.svg
7399724fc700a5ea74a9de151996ed31 *tests/testthat/test_plot_ancestral.R
3ec3462106c52b090465b1022f59ff4e *tests/testthat/test_plot_networx.R
a96b0c519c51a08bae8a0eb97d487883 *tests/testthat/test_plot_pml.R
3a302c7e7c5126983bbc108aae9b63e2 *tests/tinytest.R
f98f253b2e4d087b4cdc6f7a0819b337 *vignettes/AF.RData
53fb77a5f2c8a5c3c7241ce5992b6355 *vignettes/AdvancedFeatures.Rmd
e338c82ae1d88e8ac335755ba7471efb *vignettes/Ancestral.Rmd
f09b8cde09c12d0522b8f4ddd21d5f1f *vignettes/IntertwiningTreesAndNetworks.Rmd
a2d0dfc607eaefc4a999e75134077f06 *vignettes/MLbyHand.Rmd
dd152d8898bf60dc50f750bed22a18f7 *vignettes/Morphological.Rmd
0fd5244c39f149d36bd010aa28b8b5a1 *vignettes/Networx.Rmd
6537f663557a42d79e140b6ad683a329 *vignettes/Trees.RData
a839b8bde8b4d6059d33ceb3f1997a54 *vignettes/Trees.Rmd
3b1285249eed24e70427c0b56450533a *vignettes/cophylo.png
1ca8b1d97a011a9d0ecd9630d548dfb3 *vignettes/movie.gif
e71ed110b1c0f22b81fd56401177fc12 *vignettes/phangorn.bib
