useDynLib("BitSeq")

import(S4Vectors)
importFrom(IRanges, as.data.frame)

#exportPattern("^[^\\._]")
export("parseAlignment","estimateExpression","estimateExpressionLegacy","estimateVBExpression","getMeanVariance","estimateHyperPar","estimateDE","getGeneExpression","getWithinGeneExpression");
export("getDE","getExpression","loadSamples","writeSamples");
exportPattern("tri\\.*");
