IsoSpec  2.1.2
IsoSpec::IsoLayeredGenerator Member List

This is the complete list of members for IsoSpec::IsoLayeredGenerator, including all inherited members.

addElement(int atomCount, int noIsotopes, const double *isotopeMasses, const double *isotopeProbabilities)IsoSpec::Iso
advanceToNextConfiguration() override finalIsoSpec::IsoLayeredGeneratorinlinevirtual
advanceToNextConfigurationWithinLayer() (defined in IsoSpec::IsoLayeredGenerator)IsoSpec::IsoLayeredGeneratorinline
allDimIsoSpec::Isoprotected
atomCountsIsoSpec::Isoprotected
confSizeIsoSpec::Isoprotected
dimNumberIsoSpec::Isoprotected
doMarginalsNeedSorting() const (defined in IsoSpec::Iso)IsoSpec::Isoprotected
FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true)IsoSpec::Isostatic
FromFASTA(const std::string &fasta, bool use_nominal_masses=false, bool add_water=true)IsoSpec::Isoinlinestatic
get_conf_signature(int *space) const override finalIsoSpec::IsoLayeredGeneratorinlinevirtual
get_currentLThreshold() const (defined in IsoSpec::IsoLayeredGenerator)IsoSpec::IsoLayeredGeneratorinline
getAllDim() constIsoSpec::Isoinline
getDimNumber() constIsoSpec::Isoinline
getHeaviestPeakMass() constIsoSpec::Iso
getLightestPeakMass() constIsoSpec::Iso
getModeLProb() constIsoSpec::Iso
getModeMass() constIsoSpec::Iso
getMonoisotopicPeakMass() constIsoSpec::Iso
getTheoreticalAverageMass() constIsoSpec::Iso
getUnlikeliestPeakLProb() constIsoSpec::Iso
Iso() (defined in IsoSpec::Iso)IsoSpec::Iso
Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *_isotopeMasses, const double *_isotopeProbabilities)IsoSpec::Iso
Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (defined in IsoSpec::Iso)IsoSpec::Iso
Iso(const char *formula, bool use_nominal_masses=false)IsoSpec::Iso
Iso(const std::string &formula, bool use_nominal_masses=false)IsoSpec::Isoinline
Iso(Iso &&other)IsoSpec::Iso
Iso(const Iso &other, bool fullcopy)IsoSpec::Iso
IsoGenerator(Iso &&iso, bool alloc_partials=true)IsoSpec::IsoGenerator
IsoLayeredGenerator(const IsoLayeredGenerator &other)=delete (defined in IsoSpec::IsoLayeredGenerator)IsoSpec::IsoLayeredGenerator
IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (defined in IsoSpec::IsoLayeredGenerator)IsoSpec::IsoLayeredGenerator
isotopeNumbersIsoSpec::Isoprotected
lprob() const override finalIsoSpec::IsoLayeredGeneratorinlinevirtual
marginalsIsoSpec::Isoprotected
mass() const override finalIsoSpec::IsoLayeredGeneratorinlinevirtual
mode_lprob (defined in IsoSpec::IsoGenerator)IsoSpec::IsoGenerator
nextLayer(double offset) (defined in IsoSpec::IsoLayeredGenerator)IsoSpec::IsoLayeredGenerator
operator=(const IsoLayeredGenerator &other)=delete (defined in IsoSpec::IsoLayeredGenerator)IsoSpec::IsoLayeredGenerator
operator=(const Iso &other)=delete (defined in IsoSpec::Iso)IsoSpec::Iso
partialLProbsIsoSpec::IsoGeneratorprotected
partialMassesIsoSpec::IsoGeneratorprotected
partialProbsIsoSpec::IsoGeneratorprotected
prob() const override finalIsoSpec::IsoLayeredGeneratorinlinevirtual
recalc(int idx)IsoSpec::IsoLayeredGeneratorinline
saveMarginalLogSizeEstimates(double *priorities, double target_total_prob) constIsoSpec::Iso
stddev() constIsoSpec::Isoinline
terminate_search()IsoSpec::IsoLayeredGenerator
variance() constIsoSpec::Iso
~Iso()IsoSpec::Isovirtual
~IsoGenerator()IsoSpec::IsoGeneratorvirtual
~IsoLayeredGenerator() (defined in IsoSpec::IsoLayeredGenerator)IsoSpec::IsoLayeredGenerator