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IsoSpec
2.1.2
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This is the complete list of members for IsoSpec::IsoLayeredGenerator, including all inherited members.
addElement(int atomCount, int noIsotopes, const double *isotopeMasses, const double *isotopeProbabilities) | IsoSpec::Iso | |
advanceToNextConfiguration() override final | IsoSpec::IsoLayeredGenerator | inlinevirtual |
advanceToNextConfigurationWithinLayer() (defined in IsoSpec::IsoLayeredGenerator) | IsoSpec::IsoLayeredGenerator | inline |
allDim | IsoSpec::Iso | protected |
atomCounts | IsoSpec::Iso | protected |
confSize | IsoSpec::Iso | protected |
dimNumber | IsoSpec::Iso | protected |
doMarginalsNeedSorting() const (defined in IsoSpec::Iso) | IsoSpec::Iso | protected |
FromFASTA(const char *fasta, bool use_nominal_masses=false, bool add_water=true) | IsoSpec::Iso | static |
FromFASTA(const std::string &fasta, bool use_nominal_masses=false, bool add_water=true) | IsoSpec::Iso | inlinestatic |
get_conf_signature(int *space) const override final | IsoSpec::IsoLayeredGenerator | inlinevirtual |
get_currentLThreshold() const (defined in IsoSpec::IsoLayeredGenerator) | IsoSpec::IsoLayeredGenerator | inline |
getAllDim() const | IsoSpec::Iso | inline |
getDimNumber() const | IsoSpec::Iso | inline |
getHeaviestPeakMass() const | IsoSpec::Iso | |
getLightestPeakMass() const | IsoSpec::Iso | |
getModeLProb() const | IsoSpec::Iso | |
getModeMass() const | IsoSpec::Iso | |
getMonoisotopicPeakMass() const | IsoSpec::Iso | |
getTheoreticalAverageMass() const | IsoSpec::Iso | |
getUnlikeliestPeakLProb() const | IsoSpec::Iso | |
Iso() (defined in IsoSpec::Iso) | IsoSpec::Iso | |
Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *_isotopeMasses, const double *_isotopeProbabilities) | IsoSpec::Iso | |
Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) (defined in IsoSpec::Iso) | IsoSpec::Iso | |
Iso(const char *formula, bool use_nominal_masses=false) | IsoSpec::Iso | |
Iso(const std::string &formula, bool use_nominal_masses=false) | IsoSpec::Iso | inline |
Iso(Iso &&other) | IsoSpec::Iso | |
Iso(const Iso &other, bool fullcopy) | IsoSpec::Iso | |
IsoGenerator(Iso &&iso, bool alloc_partials=true) | IsoSpec::IsoGenerator | |
IsoLayeredGenerator(const IsoLayeredGenerator &other)=delete (defined in IsoSpec::IsoLayeredGenerator) | IsoSpec::IsoLayeredGenerator | |
IsoLayeredGenerator(Iso &&iso, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true, double t_prob_hint=0.99) (defined in IsoSpec::IsoLayeredGenerator) | IsoSpec::IsoLayeredGenerator | |
isotopeNumbers | IsoSpec::Iso | protected |
lprob() const override final | IsoSpec::IsoLayeredGenerator | inlinevirtual |
marginals | IsoSpec::Iso | protected |
mass() const override final | IsoSpec::IsoLayeredGenerator | inlinevirtual |
mode_lprob (defined in IsoSpec::IsoGenerator) | IsoSpec::IsoGenerator | |
nextLayer(double offset) (defined in IsoSpec::IsoLayeredGenerator) | IsoSpec::IsoLayeredGenerator | |
operator=(const IsoLayeredGenerator &other)=delete (defined in IsoSpec::IsoLayeredGenerator) | IsoSpec::IsoLayeredGenerator | |
operator=(const Iso &other)=delete (defined in IsoSpec::Iso) | IsoSpec::Iso | |
partialLProbs | IsoSpec::IsoGenerator | protected |
partialMasses | IsoSpec::IsoGenerator | protected |
partialProbs | IsoSpec::IsoGenerator | protected |
prob() const override final | IsoSpec::IsoLayeredGenerator | inlinevirtual |
recalc(int idx) | IsoSpec::IsoLayeredGenerator | inline |
saveMarginalLogSizeEstimates(double *priorities, double target_total_prob) const | IsoSpec::Iso | |
stddev() const | IsoSpec::Iso | inline |
terminate_search() | IsoSpec::IsoLayeredGenerator | |
variance() const | IsoSpec::Iso | |
~Iso() | IsoSpec::Iso | virtual |
~IsoGenerator() | IsoSpec::IsoGenerator | virtual |
~IsoLayeredGenerator() (defined in IsoSpec::IsoLayeredGenerator) | IsoSpec::IsoLayeredGenerator |